I asked Lazarus from GT Thunder about this and he had no objections to it. He told me that when he builds a fresh motor for his racers, they just run them like they normally would.
Of course you would also need to adjust the valves again at some point after everything is broken in. Proper engine pre start-up lubrication is also a must as well.
00' 400EX - GT Thunder 450 stroker, custom JE 12.5:1 piston,
+7mm stroked crank, HD stroker rod, HRC cam, GTT full race porting, +1mm intake valves, FCR 39 carb, CRF timing chain, Denso IXG27 iridium plug, full Hinson 8 plate clutch, Desert Toyz Supercooler w/ SPAL fan, UM airbox w/ UNI, CT Hi-Output exhaust, Roll LOBO II F/R, LT PEP 8 click ZPS piggyback fronts, PEP ZPS rear, YFZ brakes/450R master, CCP stabilizer, Hiper Tech beadlocks, Durablue X-33, TAG, Quadtech, ASV, AC, IMS, RAD, Works Connection, Galfer..
05' Kawasaki KLX 110 - Fast 50's springs F/R, HRC cradle, Rox risers, FLY fatbars, NGK CR6HIX iridium plug, Twin Air filter